Singularity/Apptainer: Local to Cluster Workflow
Singularity/Apptainer lets you package your entire development environment into a single .sif file, build it locally, …
Reproducible-Research
Code Automation
Research Tools
Convert Markdown to Jupyter Notebooks with Jupytext
Jupytext converts static Markdown files with embedded code blocks into fully executable Jupyter Notebooks while …
Code Automation
Apptainer Fundamentals: Building Your First Container
Learn how to build and deploy Apptainer containers on HPC clusters without Docker. This practical guide walks …
Code Automation
Apptainer & Conda: Reproducible HPC Python Environments
Apptainer + Conda solves the researcher's tax: environment reproduction across machines. Package your complete Python …
Jupyter — Interactive Notebooks for Research
The standard for exploratory data analysis and reproducible research. Combine code, output, equations, and narrative …